ToFiGAPS: an online Tool for Finding Genomic And Protein Sequences of any genomic or protein regions, Sharrocks Lab, University of Manchester

ToFiGAPS: an online Tool for Finding the Genomic And Protein Sequences of any genomic or protein regions (user's guide ).

Please cite our ToFiGAPS paper in your publication if you have used this tool:
Li Y, Aguilar-Martinez E, Sharrocks AD. Geno2proteo, a Tool for Batch Retrieval of DNA and Protein Sequences from Any Genomic or Protein Regions. J Integr Bioinform. 2019 Jul 13;16(3):20180090.

Choose a task: (some explanations of the different tasks can be found in the user's guide )

Find the DNA sequences of any genomic regions
Find the protein sequences of any genomic regions
Find the genomic coordinates of any protein sections
Find the protein sequences of any protein sections

Choose a species assembly and gene annotations:

Human: GRCh37, Ensembl 74 (GRCh37, Ensembl 74 human, Dec/2013)
Human: GRCh38, Ensembl 90 (GRCh38, Ensembl 90 human, Aug/2017)
Mouse: NCBI build 37, Ensembl 67 (NCBIM37, Ensembl 67 mouse, May/2012)
Mouse: GRCm38, Ensembl 90 (GRCm38, Ensembl 90 mouse, Aug/2017)

Input regions: (some explanations of the input data format can be found in the user's guide )

Upload a text file:
Write or paste the data: Examples of the input data formats: #for genomic regions chr16 3166431 3166529 + chrX 3169751 3169819 - #for protein sections ENSP00000371627 123 155 ENSP00000460890 9 81 #UCSC genome browser format chr16:3,166,431-3,166,529 chrX:3,169,751-3,169,819

Results: (some explanations of the output format can be found in the user's guide )

Contact: Dr Yaoyong Li, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, M13 9PT, UK. Email: Yaoyong.Li@manchester.ac.uk.

ToFiGAPS: an online Tool for Finding the Genomic And Protein Sequences of any genomic or protein regions (user's guide ).

Please cite our ToFiGAPS paper in your publication if you have used this tool:Li Y, Aguilar-Martinez E, Sharrocks AD. Geno2proteo, a Tool for Batch Retrieval of DNA and Protein Sequences from Any Genomic or Protein Regions. J Integr Bioinform. 2019 Jul 13;16(3):20180090.

Please cite our ToFiGAPS paper in your publication if you have used this tool:
Li Y, Aguilar-Martinez E, Sharrocks AD. Geno2proteo, a Tool for Batch Retrieval of DNA and Protein Sequences from Any Genomic or Protein Regions. J Integr Bioinform. 2019 Jul 13;16(3):20180090.